fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G13260 (EDF4, RAV1)

Alias EDF4, RAV1
TF Classification
FioreDBAP2_ERF (Click to show phylogenetic tree)
RARTFARF / NPH4/ARF7
AtTFDBRAV
PlnTFDBAP2-EREBP (v3.0), AP2-EREBP (v1.0)
DATFAP2-EREBP
TAIR short description ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1)
TAIR annotation Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator. (.1)
Gene model
Gene model cDNA support
AT1G13260.1 151
Entry clone (w/o stop) RE_01A03
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45892: other metabolic processes ->negative regulation of transcription, DNA-templated
(P) 48366: developmental processes ->leaf development
(P) 48527: developmental processes ->lateral root development
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9741: other biological processes ->response to brassinosteroid
(P) 9873: other cellular processes ->ethylene-activated signaling pathway
(P) 9910: developmental processes ->negative regulation of flower development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 3 4
rice 1 2 3
sorghum 1 2 3
physcomitrella 1 1 2
Total 1 5 8 14
Repression motif 
AGRVLRLFGVNISPE at 302/344 in AT1G13260.1
Repression motif
in putative orthologs		 
PVQMVRLFGVNIFNV at 357/401 in poplar Pt035978 (Type III)
TSSGTRLFGVDLELA at 738/1017 in physcomitrella Pp024957 (Type II)
PVQMVRLFGVNLLKL at 311/351 in soybean Gm028283 (Type III)
SGKMVRLFGVDLLKL at 297/342 in soybean Gm055124 (Type III)
SMAGSCLNLDLQHSPL at 625/951 in physcomitrella Pp021776 (Type Ia)
TSSGTRLFGVDLERA at 691/951 in physcomitrella Pp021776 (Type Ia)
EPRVVRLFGVDIAGG at 320/365 in rice Os000364 (Type III)
PVKAVRLFGVDLLTT at 374/428 in sorghum Sb032995 (Type II)
EARVVRLFGVDIAGD at 418/557 in sorghum Sb024795 (Type III)
PIQMVRLFGVNIFNV at 325/369 in poplar Pt042964 (Type II)
ARVVVKLFGVDIAGD at 305/317 in rice Os000363 (Type III)
PIQMVRLFGVNILKL at 335/384 in soybean Gm001006 (Type III)
PIQMVRLFGVNILKL at 351/401 in soybean Gm003570 (Type II)
PVKAVRLFGVDLLTA at 347/393 in rice Os003376 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project cotyledon symmetry, bushy rosette, short silique, low fertility
bushy (direct input), too many cotyledons (direct input), asynmetric cotyledon (direct input), short silique (direct input), sterile or low fertility (direct input)
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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