fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G25280 (AtTLP10)

Alias AtTLP10
TF Classification
FioreDBTUB (Click to show phylogenetic tree)
RARTFTUB
AtTFDBTUB
PlnTFDBTUB (v3.0), TUB (v1.0)
DATFTLP
TAIR short description tubby like protein 10 (.1.2.3)
TAIR annotation Member of TLP family (.1.2.3)
Gene model
Gene model cDNA support
AT1G25280.1 90
AT1G25280.2 78
AT1G25280.3 77
Entry clone (w/o stop) RE_1275_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 16567: protein metabolism ->protein ubiquitination
(F) 35091: other binding ->phosphatidylinositol binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(C) 5829: cytosol ->cytosol
(C) 5886: plasma membrane ->plasma membrane
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(F) 8081: hydrolase activity ->phosphoric diester hydrolase activity
(C) 9536: plastid ->plastid
(P) 9620: response to abiotic or biotic stimulus ->response to fungus
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 14 15
soybean 1 13 18 32
rice 1 7 6 14
sorghum 1 3 5 9
physcomitrella 1 6 7
Total 4 24 49 77
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
VSVFVELKLTLSSSSS at 564/671 in sorghum Sb028483 (Type III)
ACQGAALRLSLAFLDS at 197/692 in sorghum Sb032660 (Type Ia)
SPLIMGLSLMLAGQAE at 382/692 in sorghum Sb032660 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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