fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G47270 (AtTLP6)

Alias AtTLP6
TF Classification
FioreDBTUB (Click to show phylogenetic tree)
RARTFTUB
AtTFDBTUB
PlnTFDBTUB (v3.0), TUB (v1.0)
DATFTLP
TAIR short description tubby like protein 6 (.1.2)
TAIR annotation Member of TLP family (.1.2)
Gene model
Gene model cDNA support
AT1G47270.1 23
AT1G47270.2 16
Entry clone (w/o stop) RE_1277
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 35091: other binding ->phosphatidylinositol binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(F) 8081: hydrolase activity ->phosphoric diester hydrolase activity
(P) 9555: developmental processes ->pollen development
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5021: 3'-GAGAAAAGAAGAAGAAGAAG-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 11 13
soybean 1 2 26 29
rice 1 10 11
sorghum 1 4 5
physcomitrella 1 6 7
Total 2 6 57 65
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
ACQGAALRLSLAFLDS at 197/692 in sorghum Sb032660 (Type III)
SPLIMGLSLMLAGQAE at 382/692 in sorghum Sb032660 (Type III)
VSVFVELKLTLSSSSS at 564/671 in sorghum Sb028483 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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