fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G68840 (EDF2, RAV2, RAP2.8, TEM2, AtRAV2)

Alias EDF2, RAV2, RAP2.8, TEM2, AtRAV2
TF Classification
FioreDBAP2_ERF (Click to show phylogenetic tree)
RARTFARF / ETTIN/ARF3
AtTFDBRAV
PlnTFDBAP2-EREBP (v3.0), AP2-EREBP (v1.0)
DATFAP2-EREBP
TAIR short description TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2)
TAIR annotation Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE) (.1), Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE) (.2)
Gene model
Gene model cDNA support
AT1G68840.1 98
AT1G68840.2 74
Entry clone (w/o stop) RE_0051_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45892: other metabolic processes ->negative regulation of transcription, DNA-templated
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 9873: other cellular processes ->ethylene-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 2 2 4
rice 1 1 1 3
sorghum 2 1 3
physcomitrella 1 1 2
Total 1 7 6 14
Repression motif 
VQVVVRLFGVDIFNV at 304/352 in AT1G68840.1
VQVVVRLFGVDIFNV at 304/352 in AT1G68840.2
Repression motif
in putative orthologs		 
SMAGSCLNLDLQHSPL at 625/951 in physcomitrella Pp021776 (Type III)
TSSGTRLFGVDLERA at 691/951 in physcomitrella Pp021776 (Type III)
PIQMVRLFGVNIFNV at 325/369 in poplar Pt042964 (Type III)
EPRVVRLFGVDIAGG at 320/365 in rice Os000364 (Type III)
PVKAVRLFGVDLLTT at 374/428 in sorghum Sb032995 (Type II)
PIQMVRLFGVNILKL at 351/401 in soybean Gm003570 (Type II)
PVQMVRLFGVNLLKL at 311/351 in soybean Gm028283 (Type III)
ARVVVKLFGVDIAGD at 305/317 in rice Os000363 (Type II)
PVQMVRLFGVNIFNV at 357/401 in poplar Pt035978 (Type II)
SGKMVRLFGVDLLKL at 297/342 in soybean Gm055124 (Type III)
PVKAVRLFGVDLLTA at 347/393 in rice Os003376 (Type Ia)
EARVVRLFGVDIAGD at 418/557 in sorghum Sb024795 (Type II)
PIQMVRLFGVNILKL at 335/384 in soybean Gm001006 (Type II)
TSSGTRLFGVDLELA at 738/1017 in physcomitrella Pp024957 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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