fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G28710

Alias
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description C2H2-type zinc finger family protein (.1)
TAIR annotation C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT5G59820.1); Has 1339 Blast hits to 1281 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 497; Fungi - 0; Plants - 827; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G28710.1 6
Entry clone (w/o stop) RE_0400
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR159b: 3'-TTCTCGAGGGAAGTTAGGTTT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1
rice 1 1
sorghum
physcomitrella
Total 2 1 1 4
Repression motif 
GKRVLCLDLNLTPLEN at 133/156 in AT2G28710.1
EDLKLELGRFIF at 145/156 in AT2G28710.1
Repression motif
in putative orthologs		 
SRRVLCLDLNLTPNEN at 152/177 in poplar Pt043135 (Type Ia)
DGGGVCLDLNLTPSEN at 179/217 in rice Os004620 (Type Ib)
SRRVLCLDLNLTPYEN at 151/175 in poplar Pt033774 (Type II)
KDGDQKLNLRLDLNLT at 142/172 in soybean Gm041121 (Type Ia)
PLEEDDLKLNLRTPVL at 158/172 in soybean Gm041121 (Type Ia)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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