fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G40620 (AtbZIP18)

Alias AtbZIP18
TF Classification
FioreDBbZIP (Click to show phylogenetic tree)
RARTFbZIP / ABSCISIC ACID-INSENSITIVE5
AtTFDBbZIP
PlnTFDBbZIP (v3.0), bZIP (v1.0)
DATFbZIP
TAIR short description Basic-leucine zipper (bZIP) transcription factor family protein (.1)
TAIR annotation Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G31370.5); Has 1748 Blast hits to 1720 proteins in 178 species: Archae - 0; Bacteria - 19; Metazoa - 312; Fungi - 66; Plants - 1196; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G40620.1 26
Entry clone (w/o stop) RE_0331
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43621: protein binding ->protein self-association
(C) 48471: other intracellular components ->perinuclear region of cytoplasm
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5654: other intracellular components ->nucleoplasm
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 1 3
soybean 1 2 3
rice 1 1 2
sorghum 1 1
physcomitrella
Total 3 3 3 9
Repression motif 
SSENTELKLRLQVMEQ at 209/367 in AT2G40620.1
Repression motif
in putative orthologs		 
SSENTELKLRLQAMEQ at 247/385 in soybean Gm031558 (Type III)
SSENTELKLRLQAMEQ at 237/375 in poplar Pt013863 (Type III)
STENTELKLRLQAMEQ at 226/364 in soybean Gm004901 (Type III)
STENTELKLRLQAMEQ at 241/379 in poplar Pt014180 (Type Ia)
TTENSELKLRLQAMEQ at 179/318 in poplar Pt014165 (Type II)
STENTELKLRLQAMEQ at 224/362 in soybean Gm040434 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment