fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G20880 (WIP4)

Alias WIP4
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description WIP domain protein 4 (.1)
TAIR annotation WIP domain protein 4 (WIP4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: central root cap of the primary root, quiescent center; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 5 (TAIR:AT1G51220.1); Has 13660 Blast hits to 9603 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 12537; Fungi - 114; Plants - 690; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G20880.1 3
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 80022: developmental processes ->primary root development
(F) 8270: other binding ->zinc ion binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 10 11
rice 1 1 2
sorghum 1 2 3
physcomitrella 1 1 2
Total 5 18 23
Repression motif 
HDVTVDLHLGLPNLGD at 178/412 in AT3G20880.1
Repression motif
in putative orthologs		 
TAVTVALHLGLPSTTT at 121/345 in soybean Gm041045 (Type III)
GGGCRRLRLRLRGGRR at 199/489 in sorghum Sb023456 (Type III)
ETVTVALHLGLPSTTA at 124/350 in soybean Gm038084 (Type III)
AEGDPMDLEAAAPTDDDA at 147/428 in sorghum Sb016295 (Type III)
ETVTVALHLGLPSPCS at 112/336 in poplar Pt011936 (Type II)
AAVTVALHLGLPSTSD at 115/341 in soybean Gm030814 (Type III)
KTVTVALHLGLPRLDS at 22/203 in poplar Pt030771 (Type III)
AAVTVALHLGLPSTSI at 114/341 in soybean Gm032862 (Type III)
Status
Plasmid construction -> not_yet
Plasmid construction -> not_yet
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment