fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G50060 (ATMYB77)

Alias ATMYB77
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / GL1
AtTFDBMYB / R2R3-MYBs
PlnTFDBMYB (v3.0), MYB (v1.0)
DATFMYB
TAIR short description myb domain protein 77 (.1)
TAIR annotation Encodes a member of the R2R3 transcription factor gene family. Expressed in response to potassium deprivation and auxin. Involved in lateral root development. Interacts with ARF7 and regulates the expression of some auxin responsive genes. (.1)
Gene model
Gene model cDNA support
AT3G50060.1 64
Entry clone (w/o stop) RE_02G11
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10200: other biological processes ->response to chitin
(F) 1135: other molecular functions ->transcription factor activity, RNA polymerase II transcription factor recruiting
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(P) 48527: developmental processes ->lateral root development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 6357: transcription,DNA-dependent ->regulation of transcription from RNA polymerase II promoter
(P) 9723: other biological processes ->response to ethylene
(P) 9751: other biological processes ->response to salicylic acid
(F) 981: transcription factor activity ->RNA polymerase II transcription factor activity, sequence-specific DNA binding
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5664: 3'-AGCCAGATGTTATCCGTTTATT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 5 6
rice 1 1
sorghum 1 1 2
physcomitrella
Total 4 8 12
Repression motif 
EDPPTSLSLSLPGAEN at 203/301 in AT3G50060.1
Repression motif
in putative orthologs		 
NDPPTSLSLSLPGADS at 213/330 in poplar Pt037616 (Type II)
CDPATSLSLSLPGFGS at 176/268 in soybean Gm047970 (Type III)
NDPPTSLSLSLPGVGV at 188/297 in soybean Gm029895 (Type III)
VDPPTSLSLSLPGSIT at 195/311 in poplar Pt016180 (Type III)
AGPATSLSLSLPGVES at 196/295 in soybean Gm011952 (Type III)
PDPATSLSLSLPGFTV at 186/273 in soybean Gm039420 (Type III)
NDPPTSLSLSLPGVDS at 254/368 in soybean Gm001934 (Type II)
PPPATSLSLSLSLPGL at 204/319 in rice Os032654 (Type II)
EDPLTSLSLSLPGLDH at 254/495 in sorghum Sb026904 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment