fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G28640 (IAA11)

Alias IAA11
TF Classification
FioreDBAUX_IAA (Click to show phylogenetic tree)
RARTFARF / NPH4/ARF7
AtTFDB
PlnTFDBAUX/IAA (v3.0), AUX/IAA (v1.0)
DATFAUX-IAA
TAIR short description indole-3-acetic acid inducible 11 (.1.2.3)
TAIR annotation Auxin induced gene, IAA11 (IAA11). (.1.2.3)
Gene model
Gene model cDNA support
AT4G28640.1 26
AT4G28640.3 13
AT4G28640.2 13
Entry clone (w/o stop) RE_0186_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10583: other biological processes ->response to cyclopentenone
(C) 16021: other membranes ->integral component of membrane
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(C) 9506: other cellular components ->plasmodesma
(P) 9733: other biological processes ->response to auxin
(P) 9734: other cellular processes ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 1 2
rice
sorghum
physcomitrella
Total 1 1 5 7
Repression motif 
SPIGNELELGLTLSLG at 32/246 in AT4G28640.1
SPIGNELELGLTLSLG at 32/302 in AT4G28640.2
SPIGNELELGLTLSLG at 32/250 in AT4G28640.3
Repression motif
in putative orthologs		 
SPDEGELELGLGLSLG at 39/289 in poplar Pt040422 (Type Ia)
CPEESELELGLGLSLS at 24/287 in soybean Gm026737 (Type II)
CPEESELELGLGLSLS at 24/291 in soybean Gm035802 (Type III)
YPVEAELELGLSLGSG at 43/282 in poplar Pt041570 (Type III)
YPVEAELELGLGLSLG at 42/277 in poplar Pt034336 (Type III)
SPDEGELELGLGLSLG at 39/290 in poplar Pt040421 (Type III)
YPVEAELELGLGLSLG at 42/303 in poplar Pt034335 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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