fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G29080 (IAA27, PAP2)

Alias IAA27, PAP2
TF Classification
FioreDBAUX_IAA (Click to show phylogenetic tree)
RARTFAux/IAA
AtTFDB
PlnTFDBAUX/IAA (v3.0), AUX/IAA (v1.0)
DATFAUX-IAA
TAIR short description indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1)
TAIR annotation phytochrome-associated protein 2 (PAP2) (.1)
Gene model
Gene model cDNA support
AT4G29080.1 70
Entry clone (w/o stop) RE_01D04
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5622: other intracellular components ->intracellular
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 6417: other cellular processes ->regulation of translation
(P) 9733: other biological processes ->response to auxin
(P) 9734: signal transduction ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 1 4
soybean 1 9 13 23
rice 1 1
sorghum
physcomitrella
Total 2 1 11 14 28
Repression motif 
NFKATELRLGLPGSES at 43/305 in AT4G29080.1
Repression motif
in putative orthologs		 
NLKETELRLGLPGCES at 41/319 in soybean Gm040859 (Type II)
NLKETELRLGLPGCES at 32/307 in soybean Gm038262 (Type II)
NLKATELRLGLPGSES at 36/307 in soybean Gm025343 (Type Ia)
NLKATELRLGLPGCES at 28/287 in soybean Gm013273 (Type II)
FTTYKDLSLALEKMFS at 193/287 in soybean Gm013273 (Type II)
NLKATELRLGLPGSQS at 41/315 in soybean Gm001067 (Type III)
NLKATELRLGLPGSQS at 77/359 in soybean Gm000354 (Type III)
NLKATELRLGLPGSQS at 74/350 in soybean Gm022673 (Type III)
AALATELRLGLPGTAE at 23/266 in rice Os024773 (Type Ib)
YKNYKELSLALEKMFS at 172/266 in rice Os024773 (Type Ib)
NLKATELRLGLPGSQS at 77/359 in soybean Gm000353 (Type III)
NLKETELRLGLPGCES at 41/287 in soybean Gm040861 (Type II)
NLKATELRLGLPGSQS at 77/359 in soybean Gm000355 (Type III)
NLKATELRLGLPGCES at 27/294 in soybean Gm020117 (Type II)
FTTYKDLSLALEKMFS at 200/294 in soybean Gm020117 (Type II)
NLKATELRLGLPGSQS at 72/366 in soybean Gm004717 (Type III)
NLKATELRLGLPGLQS at 72/367 in soybean Gm040251 (Type III)
NLKATELRLGLPGSQS at 72/360 in soybean Gm009377 (Type III)
NLKATELRLGLPGSQS at 72/366 in poplar Pt039771 (Type III)
NLKATELRLGLPGSQS at 72/366 in soybean Gm004719 (Type III)
NLKETELRLGLPGCES at 41/314 in soybean Gm040862 (Type II)
NLKETELRLGLPGCES at 41/287 in soybean Gm040860 (Type II)
NLKATELRLGLPGFQS at 72/348 in soybean Gm025447 (Type III)
NFKETELRLGLPGCDS at 50/322 in soybean Gm021967 (Type II)
NLKETELRLGLPGYQS at 60/349 in poplar Pt011954 (Type Ia)
NLKATELRLGLPGSQS at 72/366 in soybean Gm004720 (Type III)
NLKATELRLGLPGSDS at 44/307 in poplar Pt005605 (Type II)
NMKETELRLGLPGSQS at 66/335 in poplar Pt030401 (Type II)
NFKETELRLGLPGCDS at 33/305 in soybean Gm021968 (Type II)
NLKATELRLGLPGFQS at 72/354 in soybean Gm025446 (Type III)
NLKATELRLGLPGFQS at 72/347 in soybean Gm025448 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment