fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G36990 (AT-HSFB1, ATHSF4, HSF4, HsfB1)

Alias AT-HSFB1, ATHSF4, HSF4, HsfB1
TF Classification
FioreDBHSF (Click to show phylogenetic tree)
RARTFHSF
AtTFDBHSF
PlnTFDBHSF (v3.0), HSF (v1.0)
DATFHSF
TAIR short description ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1)
TAIR annotation encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins. (.1)
Gene model
Gene model cDNA support
AT4G36990.1 105
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45892: transcription,DNA-dependent ->negative regulation of transcription, DNA-templated
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 9408: response to stress ->response to heat
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 2 5 8
rice 1 4 5
sorghum
physcomitrella 1 1
Total 2 4 11 17
Repression motif 
VGEGLKLFGVWLKGE at 236/284 in AT4G36990.1
Repression motif
in putative orthologs		 
PDPSARLFGVSIGLK at 319/414 in rice Os034528 (Type II)
EAEVPKLFGVSIGLK at 286/355 in soybean Gm029607 (Type III)
EEMNPKLFGVAIGKK at 234/300 in soybean Gm054819 (Type III)
NGESLKLFGVWLKGQ at 242/282 in soybean Gm047388 (Type II)
SEVSPRLFGVSIGFK at 284/343 in poplar Pt028610 (Type III)
LIPNPKLFGVAIGAK at 270/348 in soybean Gm045241 (Type III)
GMMSAKLFGVSIGRK at 310/390 in rice Os032421 (Type III)
DDAAVRLFGVRLDDD at 274/305 in rice Os013163 (Type III)
EGGGLKLFGVLLKRI at 174/275 in poplar Pt036855 (Type Ia)
GGHCLKLFGVWLKGD at 229/285 in soybean Gm029942 (Type II)
EEMNPKLFGVAIGAK at 253/324 in soybean Gm024883 (Type III)
SNKLVKLFGVPLHSQ at 319/413 in physcomitrella Pp001163 (Type II)
EAEVPKLFGVSIGLK at 286/355 in soybean Gm029606 (Type III)
PDPSARLFGVSIGLK at 319/454 in rice Os034529 (Type III)
SSAPTKLFGVHLSAA at 328/394 in rice Os033943 (Type III)
GGDCLKLFGVWLKGD at 226/282 in soybean Gm001890 (Type Ia)
Status
Plasmid construction -> The work interrupted(07Feb)
Plasmid construction -> The work interrupted(07Feb)
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment