fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G02840 (LCL1)

Alias LCL1
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / CIRCADIAN CLOCK ASSOCIATED 1
AtTFDB
PlnTFDBMYB-related (v3.0), MYB-related (v1.0)
DATFMYB-related
TAIR short description LHY/CCA1-like 1 (.1.2.3)
TAIR annotation CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. (.1.2.3)
Gene model
Gene model cDNA support
AT5G02840.1 144
AT5G02840.3 119
AT5G02840.2 79
Entry clone (w/o stop) RE_1435_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42752: other biological processes ->regulation of circadian rhythm
(P) 46686: other biological processes ->response to cadmium ion
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 7623: other biological processes ->circadian rhythm
(P) 9651: response to stress ->response to salt stress
(P) 9723: other biological processes ->response to ethylene
(P) 9733: other biological processes ->response to auxin
(P) 9737: other biological processes ->response to abscisic acid
(P) 9739: other biological processes ->response to gibberellin
(P) 9751: other biological processes ->response to salicylic acid
(P) 9753: other biological processes ->response to jasmonic acid
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 9 10
soybean 1 13 14
rice 1 2 3
sorghum 1 1 2
physcomitrella 1 1 2
Total 5 26 31
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
SNAPNHLRLGLLDMLV at 376/488 in sorghum Sb033225 (Type III)
LLLMRNLSLNLTSPSF at 277/317 in poplar Pt020472 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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