fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G09750 (HEC3, bHLH043)

Alias HEC3, bHLH043
TF Classification
FioreDBbHLH (Click to show phylogenetic tree)
RARTFbHLH / LONG HYPOCOTYL IN FAR-RED1
AtTFDBbHLH
PlnTFDBbHLH (v3.0), bHLH (v1.0)
DATFbHLH
TAIR short description HECATE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
TAIR annotation HECATE 3 (HEC3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: transmitting tissue development, carpel formation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: stigma, transmitting tissue, funicle, septum, vascular system; EXPRESSED DURING: flower development stages, gynoecium developmental stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G00120.1); Has 2886 Blast hits to 2880 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 2841; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G09750.1 4
Entry clone (w/o stop) RE_03D05_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10500: developmental processes ->transmitting tissue development
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46983: protein binding ->protein dimerization activity
(P) 48462: developmental processes ->carpel formation
(P) 48467: developmental processes ->gynoecium development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 3 1 5
rice 1 1 2
sorghum 1 1 2
physcomitrella
Total 4 5 2 11
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
HHRLHHLGLDLDPASH at 78/331 in sorghum Sb014962 (Type II)
HHRLHHLGLDLDPASH at 95/348 in sorghum Sb014961 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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