fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G12840 (NF-YA1, ATHAP2A, HAP2A, EMB2220)

Alias NF-YA1, ATHAP2A, HAP2A, EMB2220
TF Classification
FioreDBCCAAT (Click to show phylogenetic tree)
RARTFCCAAT / HAP2 type
AtTFDBCCAAT-HAP2
PlnTFDBCCAAT (v3.0), CCAAT (v1.0)
DATFCCAAT-HAP2
TAIR short description "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
TAIR annotation Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. (.1), Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. (.2), Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. (.3), Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. (.4)
Gene model
Gene model cDNA support
AT5G12840.3 20
AT5G12840.4 18
AT5G12840.2 17
AT5G12840.1 16
Entry clone (w/o stop) RE_03B10
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10262: developmental processes ->somatic embryogenesis
(C) 16602: nucleus ->CCAAT-binding factor complex
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48316: developmental processes ->seed development
(P) 48510: other biological processes ->regulation of timing of transition from vegetative to reproductive phase
(P) 55046: developmental processes ->microgametogenesis
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9790: developmental processes ->embryo development
(P) 9793: developmental processes ->embryo development ending in seed dormancy
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR169b: 3'-AGGCCGTTCAGTAGGAACCGA-5'
5'--3'

miR169c: 3'-GGCCGTTCAGTAGGAACCGAC-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1 2
rice
sorghum
physcomitrella
Total 2 1 3
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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