fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G62380 (ANAC101, VND6)

Alias ANAC101, VND6
TF Classification
FioreDBNAC (Click to show phylogenetic tree)
RARTFNAC / CUP-SHAPED COTYLEDON2
AtTFDBNAC
PlnTFDBNAC (v3.0), NAC (v1.0)
DATFNAC
TAIR short description VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)
TAIR annotation Encodes a NAC-domain transcription factor involved in xylem formation. Induces transdifferentiation of various cells into metaxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids. (.1)
Gene model
Gene model cDNA support
AT5G62380.1 4
Entry clone (w/o stop) RE_0658_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10089: other biological processes ->xylem development
(P) 10981: other cellular processes ->regulation of cell wall macromolecule metabolic process
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 42803: protein binding ->protein homodimerization activity
(P) 43068: other cellular processes ->positive regulation of programmed cell death
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45491: other metabolic processes ->xylan metabolic process
(P) 45893: other cellular processes ->positive regulation of transcription, DNA-templated
(P) 48759: other cellular processes ->xylem vessel member cell differentiation
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 71555: other cellular processes ->cell wall organization
(P) 7275: developmental processes ->multicellular organism development
(P) 90058: other biological processes ->metaxylem development
(C) 9531: cell wall ->secondary cell wall
(P) 9620: response to abiotic or biotic stimulus ->response to fungus
(P) 9733: other biological processes ->response to auxin
(P) 9735: other biological processes ->response to cytokinin
(P) 9737: other biological processes ->response to abscisic acid
(P) 9741: other biological processes ->response to brassinosteroid
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 5 6
soybean 1 8 9
rice 1 1
sorghum 1 1 2
physcomitrella
Total 4 14 18
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
PCKKEIDLQYQIPHDHFL at 214/370 in poplar Pt023412 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment