fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G08465 (YAB2)

Alias YAB2
TF Classification
FioreDBYABBY (Click to show phylogenetic tree)
RARTF
AtTFDBC2C2-YABBY
PlnTFDBC2C2-YABBY (v3.0), C2C2-YABBY (v1.0)
DATF
TAIR short description YABBY2, Plant-specific transcription factor YABBY family protein (.1)
TAIR annotation Member of the YABBY family of Arabidopsis proteins involved in the abaxial cell fate specification in lateral organs (.1)
Gene model
Gene model cDNA support
AT1G08465.1 35
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10158: other cellular processes ->abaxial cell fate specification
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 5 6
soybean 1 10 6 17
rice 1 7 8
sorghum 2 3 5
physcomitrella
Total 3 12 21 36
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
MSSSSTLSLDLLPSSE at 6/213 in poplar Pt010908 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> (Ooshima)

          
Plasmid construction -> (Ooshima)

          
Transformed -> (Ooshima)

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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