fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G46990 (IAA20)

Alias IAA20
TF Classification
FioreDBAUX_IAA (Click to show phylogenetic tree)
RARTFAux/IAA
AtTFDB
PlnTFDBAUX/IAA (v3.0), AUX/IAA (v1.0)
DATFAUX-IAA
TAIR short description indole-3-acetic acid inducible 20 (.1)
TAIR annotation Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development. (.1)
Gene model
Gene model cDNA support
AT2G46990.1 10
Entry clone (w/o stop) RE_0178
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10588: developmental processes ->cotyledon vascular tissue pattern formation
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48364: developmental processes ->root development
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9630: response to abiotic or biotic stimulus ->gravitropism
(P) 9647: developmental processes ->skotomorphogenesis
(P) 9733: other biological processes ->response to auxin
(P) 9734: other cellular processes ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 4 6
rice 1 1
sorghum
physcomitrella
Total 1 1 2 5 9
Repression motif 
RNLSTDLRLGLSFGTS at 32/175 in AT2G46990.1
Repression motif
in putative orthologs		 
QQLPTDLRLGLGISAT at 35/180 in soybean Gm007900 (Type II)
RDLSTDLRLGLGISTS at 37/174 in poplar Pt039254 (Type III)
QELPTDLRLGLGISAT at 35/177 in soybean Gm052949 (Type Ia)
KDLSTDLRLGLSISTS at 37/175 in poplar Pt016750 (Type II)
SLISTDLRLGLTLSSV at 57/205 in rice Os009627 (Type Ib)
DHLRTDLRLGLSISTT at 40/180 in soybean Gm002637 (Type III)
TDLSTDLRLGLSISPS at 119/260 in soybean Gm045965 (Type III)
TDLSTDLRLGLSISPS at 103/244 in soybean Gm035692 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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