fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G04730 (IAA16)

Alias IAA16
TF Classification
FioreDBAUX_IAA (Click to show phylogenetic tree)
RARTFAux/IAA
AtTFDB
PlnTFDBAUX/IAA (v3.0), AUX/IAA (v1.0)
DATFAUX-IAA
TAIR short description indoleacetic acid-induced protein 16 (.1)
TAIR annotation early auxin-induced (IAA16) (.1)
Gene model
Gene model cDNA support
AT3G04730.1 176
Entry clone (w/o stop) RE_01C12
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9733: other biological processes ->response to auxin
(P) 9734: signal transduction ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 9 12
soybean 8 25 33
rice 3 6 9
sorghum 1 2 1 4
physcomitrella
Total 2 15 41 58
Repression motif
NFEATELRLGLPGGNH at 7/236 in AT3G04730.1
FSETVDLKLNLSSTAM at 36/236 in AT3G04730.1
Repression motif
in putative orthologs
NLKATELRLGLPGFQS at 72/348 in soybean Gm025447 (Type III)
NLKETELCLGLPGGGG at 76/306 in soybean Gm055369 (Type II)
FSETVDLKLNLHSKED at 115/306 in soybean Gm055369 (Type II)
NFEETELRLGLPGGSA at 8/231 in soybean Gm027862 (Type II)
ETASVDLKLNLSSSDD at 43/231 in soybean Gm027862 (Type II)
NLKATELRLGLPGSQS at 77/359 in soybean Gm000354 (Type III)
NFEETELRLGLPGNDS at 8/227 in soybean Gm055526 (Type II)
ETASVDLKLNLSSCIN at 36/227 in soybean Gm055526 (Type II)
DLKGTELRLGLPGSES at 38/263 in rice Os001128 (Type III)
NLKATELRLGLPGFQS at 72/354 in soybean Gm025446 (Type III)
NLKATELRLGLPGFQS at 72/347 in soybean Gm025448 (Type III)
RFEETELRLGLPGNGG at 15/237 in poplar Pt001264 (Type III)
FSETVDLKLNLSSKEG at 44/237 in poplar Pt001264 (Type III)
GFEETELRLGLPGNVG at 17/254 in soybean Gm007181 (Type III)
SATTVDLMLNLSSKEA at 58/254 in soybean Gm007181 (Type III)
NFKETELRLGLPGCDS at 33/305 in soybean Gm021968 (Type III)
AAAATELRLGLPGTEE at 21/348 in sorghum Sb033829 (Type III)
YKNYKDLSLALEKMFS at 156/348 in sorghum Sb033829 (Type III)
DLKGTELRLGLPGSHS at 32/257 in rice Os020689 (Type III)
NLKATELRLGLPGSQS at 41/315 in soybean Gm001067 (Type III)
NLKATELRLGLPGSQS at 72/366 in soybean Gm004720 (Type III)
NFEETELRLGLPGGSA at 8/231 in soybean Gm027863 (Type II)
ETASVDLKLNLSSSDD at 43/231 in soybean Gm027863 (Type II)
LTNEHGLSLNLKETEL at 10/239 in soybean Gm028045 (Type III)
FSETVDLKLNLQTKED at 47/239 in soybean Gm028045 (Type III)
NLKATELRLGLPGSQS at 72/366 in poplar Pt039771 (Type III)
GFEETELRLGLPGGND at 10/369 in sorghum Sb020598 (Type II)
FEETIDLKLKLEQPAA at 37/369 in sorghum Sb020598 (Type II)
NYKETELCLGLPGAVG at 20/277 in poplar Pt033721 (Type III)
FAETVDLKLNLQAKEG at 52/277 in poplar Pt033721 (Type III)
GFEETELRLGLPGNGG at 16/252 in soybean Gm052267 (Type II)
SATTVDLMLNLSSKEA at 53/252 in soybean Gm052267 (Type II)
NPTSISLSLSLSLSLS at 15/490 in sorghum Sb020260 (Type II)
LSLSLSLSLSLLLPSP at 31/490 in sorghum Sb020260 (Type II)
VDVGTELRLGLPGGGA at 155/490 in sorghum Sb020260 (Type II)
FEDTIDLKLKLPTAGM at 180/490 in sorghum Sb020260 (Type II)
NLKATELRLGLPGSQS at 72/366 in soybean Gm004719 (Type III)
NFKETELRLGLPGCDS at 50/322 in soybean Gm021967 (Type III)
NLKATELRLGLPGSES at 36/307 in soybean Gm025343 (Type III)
NMKETELRLGLPGSQS at 66/335 in poplar Pt030401 (Type III)
NYEETELRLGLPGGAS at 22/250 in poplar Pt002101 (Type II)
FSETVDLKLNLSTKET at 53/250 in poplar Pt002101 (Type II)
NLKATELRLGLPGCES at 28/287 in soybean Gm013273 (Type III)
FTTYKDLSLALEKMFS at 193/287 in soybean Gm013273 (Type III)
NLKATELRLGLPGSQS at 77/359 in soybean Gm000355 (Type III)
NLKATELRLGLPGSQS at 72/360 in soybean Gm009377 (Type III)
DLKGTELRLGLPGSES at 38/263 in rice Os001130 (Type III)
AALATELRLGLPGTAE at 23/266 in rice Os024773 (Type III)
YKNYKELSLALEKMFS at 172/266 in rice Os024773 (Type III)
NFEETELRLGLPLSGN at 17/230 in soybean Gm053213 (Type II)
SDTSVDLKLNLSSTSN at 48/230 in soybean Gm053213 (Type II)
NLKATELRLGLPGSQS at 72/366 in soybean Gm004717 (Type III)
NYKETELCLGLPGAVG at 19/248 in poplar Pt042254 (Type III)
FAETVDLKLNLQAKEG at 51/248 in poplar Pt042254 (Type III)
AFEATELRLGLPGGGG at 11/277 in rice Os041779 (Type II)
FAETIDLKLKLEPAAA at 44/277 in rice Os041779 (Type II)
NLKETELRLGLPGYQS at 60/349 in poplar Pt011954 (Type III)
DLKGTELRLGLPGSHS at 32/257 in rice Os020690 (Type III)
NLKETELRLGLPGCES at 41/319 in soybean Gm040859 (Type III)
RFEETELRLGLPGNGG at 15/229 in poplar Pt001265 (Type III)
FSETVDLKLNLSSKEG at 44/229 in poplar Pt001265 (Type III)
NLKATELRLGLPGSDS at 44/307 in poplar Pt005605 (Type III)
VFEETELRLGLRLGLP at 7/248 in soybean Gm026657 (Type III)
ETTSVDLMLNLSPKEA at 50/248 in soybean Gm026657 (Type III)
NFEETELRLGLPGGIG at 21/246 in poplar Pt015737 (Type Ia)
FSETVDLKLNLSTKES at 52/246 in poplar Pt015737 (Type Ia)
NLKETELRLGLPGCES at 32/307 in soybean Gm038262 (Type III)
SFKETELTLGLPGESR at 23/220 in poplar Pt028468 (Type II)
VDVGTELRLGLPGGGG at 11/236 in rice Os014856 (Type II)
FEETIDLKLKLPTAGM at 40/236 in rice Os014856 (Type II)
YNSYKDLSLALQKMFG at 157/236 in rice Os014856 (Type II)
NLKETELRLGLPGCES at 41/314 in soybean Gm040862 (Type III)
NFEETELRLGLPGGSA at 8/231 in soybean Gm027861 (Type II)
ETASVDLKLNLSSSDD at 43/231 in soybean Gm027861 (Type II)
NLKATELRLGLPGSQS at 77/359 in soybean Gm000353 (Type III)
VDVGTELRLGLPGGGG at 11/236 in rice Os014857 (Type II)
FEETIDLKLKLPTAGM at 40/236 in rice Os014857 (Type II)
YNSYKDLSLALQKMFG at 157/236 in rice Os014857 (Type II)
NFEETELRLGLPLSGN at 17/243 in soybean Gm008159 (Type II)
SDTAVDLKLNLSSTSN at 47/243 in soybean Gm008159 (Type II)
NLKATELRLGLPGSQS at 74/350 in soybean Gm022673 (Type III)
GFEETELRLGLPGNGG at 15/237 in poplar Pt039463 (Type III)
FSETVDLKLKLSSKES at 42/237 in poplar Pt039463 (Type III)
VFEETELRLGLRLGLP at 7/216 in soybean Gm026658 (Type III)
ETTSVDLMLNLSPKEA at 50/216 in soybean Gm026658 (Type III)
NLKATELRLGLPGLQS at 72/367 in soybean Gm040251 (Type III)
NLKATELRLGLPGCES at 27/294 in soybean Gm020117 (Type III)
FTTYKDLSLALEKMFS at 200/294 in soybean Gm020117 (Type III)
DLKGTELRLGLPGSES at 38/263 in rice Os001129 (Type III)

        
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants

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