fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G15270 (SPL5)

Alias SPL5
TF Classification
FioreDBSBP (Click to show phylogenetic tree)
RARTFSBP
AtTFDBSBP
PlnTFDBSBP (v3.0), SBP (v1.0)
DATFSBP
TAIR short description squamosa promoter binding protein-like 5 (.1)
TAIR annotation Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. (.1)
Gene model
Gene model cDNA support
AT3G15270.1 30
Entry clone (w/o stop) RE_0969
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10321: developmental processes ->regulation of vegetative phase change
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR156a: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156b: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156c: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156d: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156e: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156f: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156h: 3'-CACGAGAGAAAGAAGACAGTT-5'
5'--3'

miR156i: 3'-CACGAGAGAGAGAAGACAGTT-5'
5'--3'

miR156j: 3'-CACGAGAGAGAGAAGACAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 11 13
soybean 2 16 18
rice 1 5 6
sorghum 2 4 6
physcomitrella 1 7 8
Total 1 7 43 51
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
ANEDDGLGLNLGGSLT at 109/1039 in poplar Pt000952 (Type III)
NDGAGSLNLNLGGQVY at 113/1032 in soybean Gm042639 (Type III)
TCEFFQLALQLRHLRQ at 461/1419 in sorghum Sb031176 (Type III)
NDAAGSLNLKLGGQVY at 115/1030 in poplar Pt034156 (Type III)
NDAAGSLNLKLGGQVY at 115/1030 in poplar Pt034157 (Type III)
QEAVGSLSLKLGGDAY at 164/1016 in physcomitrella Pp008650 (Type III)
QEAVGSLSLKLGGDAY at 164/1296 in physcomitrella Pp008649 (Type III)
DQETGGLSLKLGGQRD at 117/1002 in poplar Pt039458 (Type III)
NNEVGSLNLKLGEQVY at 115/1035 in poplar Pt041897 (Type III)
GHFSGELELALQGSGP at 348/388 in sorghum Sb006153 (Type III)
SVDDDGLGLNLGGSLT at 71/1044 in poplar Pt038233 (Type III)
NEEGGTLSLKLVSGST at 116/936 in soybean Gm002653 (Type III)
NDGAGSLNLNLGGQVY at 113/1032 in soybean Gm042640 (Type III)
AHFSGELELALQGNGP at 382/417 in rice Os032080 (Type III)
QRGSADLGLQLDVRAT at 119/1307 in physcomitrella Pp035277 (Type III)
LQRPSIDLQQPPPSEQYS at 584/1307 in physcomitrella Pp035277 (Type III)
NEEGGTLSLKLGGHAS at 119/687 in soybean Gm026414 (Type III)
RSRGADLGLQLDIRAA at 120/1049 in physcomitrella Pp036022 (Type II)
LQRPSIDLQQPLPSEQCS at 588/1049 in physcomitrella Pp036022 (Type II)
DRETGGLSLKLGGERD at 117/1004 in poplar Pt016591 (Type III)
QRGSADLGLQLDVRAT at 119/1027 in physcomitrella Pp035278 (Type III)
LQRPSIDLQQPPPSEQYS at 584/1027 in physcomitrella Pp035278 (Type III)
NDGAGSLNLNLGGQVY at 96/953 in soybean Gm024422 (Type III)
RGTAPELQLHLASSRP at 7/247 in sorghum Sb006468 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        

         dwarf (direct input), 
         early flowering (direct input)


        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID540
           Torenia
           35S:AtCDS-SRDX
           2007-07-06
           flower bulk, 1 line 
           no phenotype 
            
          

         

         

          Comment