fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G16500 (IAA26, PAP1)

Alias IAA26, PAP1
TF Classification
FioreDBAUX_IAA (Click to show phylogenetic tree)
RARTFARF / NPH4/ARF7
AtTFDB
PlnTFDBAUX/IAA (v3.0), AUX/IAA (v1.0)
DATFAUX-IAA
TAIR short description indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1)
TAIR annotation phytochrome-associated protein 1 (PAP1) (.1)
Gene model
Gene model cDNA support
AT3G16500.1 64
Entry clone (w/o stop) RE_0181 RE_03F06_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9733: other biological processes ->response to auxin
(P) 9734: signal transduction ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 3 4
rice 1 1
sorghum 1 1
physcomitrella
Total 2 2 4 8
Repression motif 
TDQEKKLELRLGPPGG at 36/269 in AT3G16500.1
Repression motif
in putative orthologs		 
SSEERKLELRLGPPGE at 38/320 in soybean Gm040891 (Type II)
SSEERKLELRLGPPGE at 38/320 in soybean Gm040892 (Type Ia)
SSEERKLELRLGPPGE at 38/346 in soybean Gm038234 (Type II)
SSEEKKLELRLGPPGE at 39/336 in poplar Pt030850 (Type Ia)
GDDEETLQLSLGLPGG at 32/292 in sorghum Sb009950 (Type Ib)
SSEEKKLELRLGPPGE at 39/336 in poplar Pt030849 (Type II)
EEEEKTLELSLGLPGG at 40/300 in rice Os007108 (Type Ib)
SSEERKLELRLGPPGE at 38/346 in soybean Gm038235 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment