Alias |
bHLH147, AIF3 |
TF Classification |
FioreDB | bHLH (Click to show phylogenetic tree) |
RARTF | bHLH / checked group |
AtTFDB | bHLH |
PlnTFDB | |
DATF | |
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TAIR short description |
sequence-specific DNA binding transcription factors (.1.2) |
TAIR annotation |
sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G06590.2); Has 168 Blast hits to 168 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1) |
Gene model |
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Entry clone (w/o stop) |
RE_01D09 |
External link |
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Gene Ontology (GO) |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 46983: protein binding |
->protein dimerization activity |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: other cellular processes |
->regulation of transcription, DNA-templated |
|
miRNA/tasiRNA |
Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5' |
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Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
1 |
|
1 |
|
2 |
soybean |
1 |
|
2 |
1 |
4 |
rice |
|
|
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sorghum |
|
|
|
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physcomitrella |
|
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|
Total |
2 |
|
3 |
1 |
6 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
|
CRES-T phenotype from individual project
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CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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