fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G08520

Alias
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / CIRCADIAN CLOCK ASSOCIATED 1
AtTFDB
PlnTFDBMYB (v3.0), MYB (v1.0)
DATFMYB
TAIR short description Duplicated homeodomain-like superfamily protein (.1)
TAIR annotation Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like transcriptional regulator (TAIR:AT5G23650.1); Has 2184 Blast hits to 2148 proteins in 187 species: Archae - 0; Bacteria - 10; Metazoa - 113; Fungi - 60; Plants - 1413; Viruses - 0; Other Eukaryotes - 588 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G08520.1 41
Entry clone (w/o stop) RE_02H06_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10116: other cellular processes ->positive regulation of abscisic acid biosynthetic process
(P) 1901001: response to stress ->negative regulation of response to salt stress
(P) 1901371: developmental processes ->regulation of leaf morphogenesis
(P) 1905615: other biological processes ->positive regulation of developmental vegetative growth
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45893: other metabolic processes ->positive regulation of transcription, DNA-templated
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9414: response to stress ->response to water deprivation
(P) 9651: response to stress ->response to salt stress
(P) 9738: signal transduction ->abscisic acid-activated signaling pathway
(P) 9739: other biological processes ->response to gibberellin
(P) 9751: other biological processes ->response to salicylic acid
(P) 9787: other cellular processes ->regulation of abscisic acid-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 1 6
soybean 1 3 2 6
rice 1 1 2
sorghum 1 1
physcomitrella 1 3 4
Total 5 11 3 19
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
VTLSQGLQLKLVMHRS at 207/476 in sorghum Sb030230 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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