fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G23090 (NF-YB13)

Alias NF-YB13
TF Classification
FioreDBCCAAT (Click to show phylogenetic tree)
RARTFCCAAT / Dr1
AtTFDBCCAAT-DR1
PlnTFDBCCAAT (v3.0), CCAAT (v1.0)
DATFCCAAT-Dr1
TAIR short description "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4)
TAIR annotation "nuclear factor Y, subunit B13" (NF-YB13); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B12 (TAIR:AT5G08190.1); Has 1491 Blast hits to 1491 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 490; Fungi - 374; Plants - 520; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G23090.1 16
AT5G23090.2 16
AT5G23090.3 13
AT5G23090.4 12
Entry clone (w/o stop) RE_02B04
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46982: protein binding ->protein heterodimerization activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 6 2 9
rice
sorghum 1 1
physcomitrella 2 2
Total 2 10 2 14
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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