fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT5G48250 (COL10)
Alias
COL10
TF Classification
FioreDB
CO
(Click to show phylogenetic tree)
RARTF
C2C2(Zn)
/ CO-like
AtTFDB
C2C2-CO-like
PlnTFDB
C2C2-CO-like
(v3.0), C2C2-CO-like (v1.0)
DATF
C2C2-CO-like
TAIR short description
B-box type zinc finger protein with CCT domain (.1)
TAIR annotation
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 9 (TAIR:AT3G07650.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT5G48250.1
28
Entry clone (w/o stop)
RE_1104_x
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding
->protein binding
(C) 5634: nucleus
->nucleus
(C) 5886: plasma membrane
->plasma membrane
(F) 8270: other binding
->zinc ion binding
miRNA/tasiRNA
Target sequence
miRNA/tasiRNA sequence
Map
5'--3'
miR843: 3'-AGGTTACTTCGAGCTGGATTT-5'
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
soybean
1
2
3
rice
1
3
4
sorghum
1
1
2
physcomitrella
Total
3
3
4
10
Repression motif
Repression motif
in putative orthologs
HLQQT
SLNLAL
LPEMG at 298/747 in sorghum
Sb027740
(Type III)
Status
Plasmid construction
-> done
Plasmid construction
-> done
Transformed
-> done
T1 seed harvested
-> done
T2 seed harvested
-> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment