Alias
ATCUC2, CUC2, ANAC098
TF Classification
FioreDB NAC (Click to show phylogenetic tree)
RARTF NAC / CUP-SHAPED COTYLEDON2
AtTFDB NAC
PlnTFDB NAC (v3.0), NAC (v1.0)
DATF NAC
TAIR short description
CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
TAIR annotation
Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2. (.1)
Gene model
Entry clone (w/o stop)
RE_0656_x
External link
Gene Ontology (GO)
(P) 10072: developmental processes
->primary shoot apical meristem specification
(P) 10160: developmental processes
->formation of animal organ boundary
(P) 10223: developmental processes
->secondary shoot formation
(F) 3677: DNA or RNA binding
->DNA binding
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(P) 48366: developmental processes
->leaf development
(F) 5515: protein binding
->protein binding
(C) 5634: nucleus
->nucleus
(P) 6351: transcription,DNA-dependent
->transcription, DNA-templated
(P) 6355: other cellular processes
->regulation of transcription, DNA-templated
(P) 7275: developmental processes
->multicellular organism development
(P) 90709: other biological processes
->regulation of timing of plant organ formation
miRNA/tasiRNA
Target sequence
miRNA/tasiRNA sequence
Map
5'--3'
miR164a: 3'-ACGTGCACGGGACGAAGAGGT-5'
5'--3'
miR164b: 3'-ACGTGCACGGGACGAAGAGGT-5'
5'--3'
miR164c: 3'-GCGTGCACGGGACGAAGAGGT-5'
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
3
5
soybean
1
3
3
7
rice
1
1
sorghum
1
1
physcomitrella
Total
4
4
6
14
Repression motif
Repression motif in putative orthologs
RAIAEIDLNKCEP WELPE at 58/373 in rice Os024821 (Type Ia)
RAIAEIDLNKCEP WELPD at 100/526 in sorghum Sb031540 (Type Ia)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment