fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G62020 (AT-HSFB2A)

Alias AT-HSFB2A
TF Classification
FioreDBHSF (Click to show phylogenetic tree)
RARTFHSF
AtTFDBHSF
PlnTFDBHSF (v3.0), HSF (v1.0)
DATFHSF
TAIR short description ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1)
TAIR annotation member of Heat Stress Transcription Factor (Hsf) family (.1)
Gene model
Gene model cDNA support
AT5G62020.1 31
Entry clone (w/o stop) IE_03H05
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10200: other biological processes ->response to chitin
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 1 3
soybean 1 3 2 6
rice
sorghum
physcomitrella
Total 2 4 3 9
Repression motif 
EEASPRLFGVPIGLK at 251/299 in AT5G62020.1
Repression motif
in putative orthologs		 
EAEVPKLFGVSIGLK at 286/355 in soybean Gm029606 (Type III)
EEMNPKLFGVAIGKK at 234/300 in soybean Gm054819 (Type II)
RSSSPGLSLELLDENE at 165/286 in poplar Pt026513 (Type II)
EEMNPKLFGVVIGTK at 229/289 in soybean Gm028649 (Type II)
EAEVPKLFGVSIGLK at 286/355 in soybean Gm029607 (Type III)
LIPNPKLFGVAIGAK at 270/348 in soybean Gm045241 (Type II)
EEMNPKLFGVAIGAK at 253/324 in soybean Gm024883 (Type Ia)
SEVSPRLFGVSIGFK at 284/343 in poplar Pt028610 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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