fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G04250 (IAA17, AXR3)

Alias IAA17, AXR3
TF Classification
FioreDBAUX_IAA (Click to show phylogenetic tree)
RARTFAux/IAA
AtTFDB
PlnTFDBAUX/IAA (v3.0), AUX/IAA (v1.0)
DATFAUX-IAA
TAIR short description indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1)
TAIR annotation Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. (.1)
Gene model
Gene model cDNA support
AT1G04250.1 126
Entry clone (w/o stop) RE_01C08
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 1900057: developmental processes ->positive regulation of leaf senescence
(C) 19005: other intracellular components ->SCF ubiquitin ligase complex
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 42802: protein binding ->identical protein binding
(C) 502: other intracellular components ->proteasome complex
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(C) 8180: other intracellular components ->COP9 signalosome
(P) 9733: other biological processes ->response to auxin
(P) 9734: other cellular processes ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 11 12
soybean 4 28 32
rice 1 8 9
sorghum 1 3 4
physcomitrella
Total 7 50 57
Repression motif
NLRETELCLGLPGGDT at 12/229 in AT1G04250.1
FSETVDLKLNLNNEPA at 38/229 in AT1G04250.1
Repression motif
in putative orthologs
NLKATELRLGLPGSES at 36/307 in soybean Gm025343 (Type III)
NYEETELRLGLPGGAS at 22/250 in poplar Pt002101 (Type III)
FSETVDLKLNLSTKET at 53/250 in poplar Pt002101 (Type III)
LTNEHGLSLNLKETEL at 10/239 in soybean Gm028045 (Type III)
FSETVDLKLNLQTKED at 47/239 in soybean Gm028045 (Type III)
NLKETELRLGLPGCES at 32/307 in soybean Gm038262 (Type III)
NLKATELRLGLPGCES at 27/294 in soybean Gm020117 (Type III)
FTTYKDLSLALEKMFS at 200/294 in soybean Gm020117 (Type III)
SFKETELTLGLPGESR at 23/220 in poplar Pt028468 (Type III)
VDVGTELRLGLPGGGG at 11/236 in rice Os014856 (Type III)
FEETIDLKLKLPTAGM at 40/236 in rice Os014856 (Type III)
YNSYKDLSLALQKMFG at 157/236 in rice Os014856 (Type III)
NYKETELCLGLPGAVG at 20/277 in poplar Pt033721 (Type III)
FAETVDLKLNLQAKEG at 52/277 in poplar Pt033721 (Type III)
NMKETELRLGLPGSQS at 66/335 in poplar Pt030401 (Type III)
NLKATELRLGLPGSQS at 77/359 in soybean Gm000353 (Type III)
DLKGTELRLGLPGSHS at 32/257 in rice Os020689 (Type III)
NFEETELRLGLPGGIG at 21/246 in poplar Pt015737 (Type III)
FSETVDLKLNLSTKES at 52/246 in poplar Pt015737 (Type III)
GFEETELRLGLPGNGG at 15/237 in poplar Pt039463 (Type III)
FSETVDLKLKLSSKES at 42/237 in poplar Pt039463 (Type III)
AALATELRLGLPGTAE at 23/266 in rice Os024773 (Type III)
YKNYKELSLALEKMFS at 172/266 in rice Os024773 (Type III)
NLKATELRLGLPGSDS at 44/307 in poplar Pt005605 (Type III)
NFEETELRLGLPGGSA at 8/231 in soybean Gm027862 (Type III)
ETASVDLKLNLSSSDD at 43/231 in soybean Gm027862 (Type III)
VFEETELRLGLRLGLP at 7/216 in soybean Gm026658 (Type III)
ETTSVDLMLNLSPKEA at 50/216 in soybean Gm026658 (Type III)
NFEETELRLGLPLSGN at 17/230 in soybean Gm053213 (Type III)
SDTSVDLKLNLSSTSN at 48/230 in soybean Gm053213 (Type III)
NLKATELRLGLPGFQS at 72/347 in soybean Gm025448 (Type III)
NLKATELRLGLPGSQS at 41/315 in soybean Gm001067 (Type III)
GFEETELRLGLPGNGG at 16/252 in soybean Gm052267 (Type III)
SATTVDLMLNLSSKEA at 53/252 in soybean Gm052267 (Type III)
NLKATELRLGLPGSQS at 72/360 in soybean Gm009377 (Type III)
NLKATELRLGLPGCES at 28/287 in soybean Gm013273 (Type III)
FTTYKDLSLALEKMFS at 193/287 in soybean Gm013273 (Type III)
NLKATELRLGLPGFQS at 72/354 in soybean Gm025446 (Type III)
RFEETELRLGLPGNGG at 15/229 in poplar Pt001265 (Type III)
FSETVDLKLNLSSKEG at 44/229 in poplar Pt001265 (Type III)
DLKGTELRLGLPGSHS at 32/257 in rice Os020690 (Type III)
NLKATELRLGLPGSQS at 72/366 in soybean Gm004717 (Type III)
NLKATELRLGLPGSQS at 77/359 in soybean Gm000354 (Type III)
NLKETELCLGLPGGGG at 76/306 in soybean Gm055369 (Type II)
FSETVDLKLNLHSKED at 115/306 in soybean Gm055369 (Type II)
VDVGTELRLGLPGGGG at 11/236 in rice Os014857 (Type III)
FEETIDLKLKLPTAGM at 40/236 in rice Os014857 (Type III)
YNSYKDLSLALQKMFG at 157/236 in rice Os014857 (Type III)
GFEETELRLGLPGGND at 10/369 in sorghum Sb020598 (Type III)
FEETIDLKLKLEQPAA at 37/369 in sorghum Sb020598 (Type III)
DLKGTELRLGLPGSES at 38/263 in rice Os001129 (Type III)
NLKATELRLGLPGSQS at 72/366 in soybean Gm004719 (Type III)
NLKETELTLGLPGTKT at 16/188 in soybean Gm040794 (Type II)
NLKATELRLGLPGLQS at 72/367 in soybean Gm040251 (Type III)
NFEETELRLGLPGNDS at 8/227 in soybean Gm055526 (Type III)
ETASVDLKLNLSSCIN at 36/227 in soybean Gm055526 (Type III)
NYKETELCLGLPGAVG at 19/248 in poplar Pt042254 (Type II)
FAETVDLKLNLQAKEG at 51/248 in poplar Pt042254 (Type II)
NFEETELRLGLPGGSA at 8/231 in soybean Gm027861 (Type III)
ETASVDLKLNLSSSDD at 43/231 in soybean Gm027861 (Type III)
NLKATELRLGLPGSQS at 74/350 in soybean Gm022673 (Type III)
AFEATELRLGLPGGGG at 11/277 in rice Os041779 (Type II)
FAETIDLKLKLEPAAA at 44/277 in rice Os041779 (Type II)
NPTSISLSLSLSLSLS at 15/490 in sorghum Sb020260 (Type III)
LSLSLSLSLSLLLPSP at 31/490 in sorghum Sb020260 (Type III)
VDVGTELRLGLPGGGA at 155/490 in sorghum Sb020260 (Type III)
FEDTIDLKLKLPTAGM at 180/490 in sorghum Sb020260 (Type III)
AAAATELRLGLPGTEE at 21/348 in sorghum Sb033829 (Type III)
YKNYKDLSLALEKMFS at 156/348 in sorghum Sb033829 (Type III)
NLKETELTLGLPGTKT at 16/189 in soybean Gm040791 (Type II)
NLKETELRLGLPGYQS at 60/349 in poplar Pt011954 (Type III)
NLKATELRLGLPGSQS at 72/366 in poplar Pt039771 (Type III)
NLKETELTLGLPGTKT at 16/187 in soybean Gm040793 (Type II)
VFEETELRLGLRLGLP at 7/248 in soybean Gm026657 (Type III)
ETTSVDLMLNLSPKEA at 50/248 in soybean Gm026657 (Type III)
NFEETELRLGLPGGSA at 8/231 in soybean Gm027863 (Type III)
ETASVDLKLNLSSSDD at 43/231 in soybean Gm027863 (Type III)
GFEETELRLGLPGNVG at 17/254 in soybean Gm007181 (Type III)
SATTVDLMLNLSSKEA at 58/254 in soybean Gm007181 (Type III)
NFEETELRLGLPLSGN at 17/243 in soybean Gm008159 (Type III)
SDTAVDLKLNLSSTSN at 47/243 in soybean Gm008159 (Type III)
NLKETELRLGLPGCES at 41/319 in soybean Gm040859 (Type III)
NLKATELRLGLPGSQS at 77/359 in soybean Gm000355 (Type III)
DLKGTELRLGLPGSES at 38/263 in rice Os001130 (Type III)
DLKGTELRLGLPGSES at 38/263 in rice Os001128 (Type III)
NLKATELRLGLPGSQS at 72/366 in soybean Gm004720 (Type III)
RFEETELRLGLPGNGG at 15/237 in poplar Pt001264 (Type III)
FSETVDLKLNLSSKEG at 44/237 in poplar Pt001264 (Type III)

        
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants

Comment