fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G08970 (NF-YC9, HAP5C)

Alias NF-YC9, HAP5C
TF Classification
FioreDBCCAAT (Click to show phylogenetic tree)
RARTFCCAAT / HAP5 type
AtTFDBCCAAT-HAP5
PlnTFDBCCAAT (v3.0), CCAAT (v1.0)
DATFCCAAT-HAP5
TAIR short description "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4)
TAIR annotation heme activated protein (HAP5c) (.1.2.3.4)
Gene model
Gene model cDNA support
AT1G08970.2 60
AT1G08970.1 55
AT1G08970.3 48
AT1G08970.4 37
Entry clone (w/o stop) RE_03B09
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10029: developmental processes ->regulation of seed germination
(P) 2000306: developmental processes ->positive regulation of photomorphogenesis
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 46982: protein binding ->protein heterodimerization activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(C) 5829: cytosol ->cytosol
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9738: other cellular processes ->abscisic acid-activated signaling pathway
(P) 9740: other cellular processes ->gibberellic acid mediated signaling pathway
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5643: 3'-CGTTGGTCTAGAATTTTCGGA-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4 8
soybean 1 5 5 11
rice 1 5 6
sorghum 2 4 6
physcomitrella 1 12 13
Total 2 12 30 44
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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