fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G24430 (ANAC039, ANAC038)

Alias ANAC039, ANAC038
TF Classification
FioreDBNAC (Click to show phylogenetic tree)
RARTFNAC / CUP-SHAPED COTYLEDON2
AtTFDBNAC
PlnTFDBNAC (v3.0), NAC (v1.0)
DATFNAC
TAIR short description Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
TAIR annotation NAC domain containing protein 38 (NAC038); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 58 (TAIR:AT3G18400.1); Has 3031 Blast hits to 3023 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 3020; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G24430.1 11
AT2G24430.2 7
Entry clone (w/o stop) RE_01H07
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 8 9
soybean 1 10 11
rice 1 2 3
sorghum 1 1 2
physcomitrella 1 2 3
Total 5 23 28
Repression motif 
HMPVSGLNLNLGGALV at 263/316 in AT2G24430.1
EMSQCMDLDGYWPSY at 306/316 in AT2G24430.1
HMPVSGLNLNLGGALV at 263/316 in AT2G24430.2
EMSQCMDLDGYWPSY at 306/316 in AT2G24430.2
Repression motif
in putative orthologs		 
CFTISGLNLNLGGAAS at 256/316 in poplar Pt005566 (Type III)
GMEQCMDLENYWPPY at 307/316 in poplar Pt005566 (Type III)
TLSGSGLNLNLGASPA at 280/376 in sorghum Sb006176 (Type II)
PFTLSGLNLNLGSSPA at 257/352 in rice Os034288 (Type II)
GFTISGLNLNLGGGGA at 254/338 in soybean Gm014469 (Type II)
GVDHCMDLDNYWPSY at 329/338 in soybean Gm014469 (Type II)
RAIAEIDLNKCEPWELPE at 58/373 in rice Os024821 (Type III)
CFTVSGLNLNLGGATS at 259/334 in poplar Pt009519 (Type II)
GMQQCMDLENYWPAY at 325/334 in poplar Pt009519 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo 		very strong cotyledon fusion
fused cotyledon (direct input), meristem-less (direct input)
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
ID Species Construct Date Comment Phenotype Photo
ID47 Chrysanthemum 35S:AtCDS-SRDX 2005-08-18   no transformant   
ID58 Cyclamen 35S:AtCDS-SRDX 2005-09-08   no phenotype   
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