fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G45190 (FIL, YAB1, AFO)

Alias FIL, YAB1, AFO
TF Classification
FioreDBYABBY (Click to show phylogenetic tree)
RARTFC2C2(Zn) / YABBY
AtTFDBC2C2-YABBY
PlnTFDBC2C2-YABBY (v3.0), C2C2-YABBY (v1.0)
DATFC2C2-YABBY
TAIR short description YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1)
TAIR annotation Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS). (.1)
Gene model
Gene model cDNA support
AT2G45190.1 42
Entry clone (w/o stop) IE_02B01
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10093: developmental processes ->specification of floral organ identity
(P) 10154: developmental processes ->fruit development
(P) 10158: other cellular processes ->abaxial cell fate specification
(P) 10450: developmental processes ->inflorescence meristem growth
(P) 1902183: other biological processes ->regulation of shoot apical meristem development
(P) 2000024: developmental processes ->regulation of leaf development
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45165: other cellular processes ->cell fate commitment
(F) 46872: other binding ->metal ion binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 7275: developmental processes ->multicellular organism development
(P) 90706: developmental processes ->specification of plant organ position
(P) 9909: developmental processes ->regulation of flower development
(P) 9933: other biological processes ->meristem structural organization
(P) 9944: developmental processes ->polarity specification of adaxial/abaxial axis
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR395a: 3'-CTCAAGGGGGTTTGTGAAGTC-5'
5'--3'

miR395b: 3'-CTCAGGGGGGTTTGTGAAGTC-5'
5'--3'

miR395e: 3'-CTCAAGGGGGTTTGTGAAGTC-5'
5'--3'

miR395f: 3'-CTCAGGGGGGTTTGTGAAGTC-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 3 4
rice 1 1 1 3
sorghum 2 1 3
physcomitrella
Total 3 10 2 15
Repression motif 
LPASNQLQLQLGPHSY at 74/229 in AT2G45190.1
Repression motif
in putative orthologs		 
MSSSSTLSLDLLPSSE at 6/213 in poplar Pt010908 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
abnormal seedling (direct input), abnormal leaf (direct input), meristem-less (direct input)
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
ID Species Construct Date Comment Phenotype Photo
ID32 Chrysanthemum 35S:AtCDS-SRDX 2005-08-18   no phenotype   
ID54 Gentiana AtACT2pro:AtCDS-SRDX 2005-08-31   No phenotype   
ID91 Cyclamen 35S:AtCDS-SRDX 2006-04-26 now on progress     
ID595 Rosa 35S:AtCDS-SRDX 2008-10-01   Flowers in flower  and more...
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