fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G18400 (ANAC058)

Alias ANAC058
TF Classification
FioreDBNAC (Click to show phylogenetic tree)
RARTFNAC / CUP-SHAPED COTYLEDON2
AtTFDBNAC
PlnTFDBNAC (v3.0), NAC (v1.0)
DATFNAC
TAIR short description NAC domain containing protein 58 (.1)
TAIR annotation NAC domain containing protein 58 (NAC058); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 38 (TAIR:AT2G24430.2); Has 3056 Blast hits to 3045 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3049; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G18400.1 2
Entry clone (w/o stop) RE_0630_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 9 11
soybean 1 3 14 18
rice 1 3 4
sorghum 1 1 2
physcomitrella 1 1 2
Total 4 5 28 37
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
GFTISGLNLNLGGGGA at 254/338 in soybean Gm014469 (Type III)
GVDHCMDLDNYWPSY at 329/338 in soybean Gm014469 (Type III)
TLSGSGLNLNLGASPA at 280/376 in sorghum Sb006176 (Type III)
PFTLSGLNLNLGSSPA at 257/352 in rice Os034288 (Type III)
CFTVSGLNLNLGGATS at 259/334 in poplar Pt009519 (Type III)
GMQQCMDLENYWPAY at 325/334 in poplar Pt009519 (Type III)
CFTISGLNLNLGGAAS at 256/316 in poplar Pt005566 (Type III)
GMEQCMDLENYWPPY at 307/316 in poplar Pt005566 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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