Alias |
AHL15, AGF2 |
TF Classification |
FioreDB | AT-hook (Click to show phylogenetic tree) |
RARTF | AT-hook |
AtTFDB | |
PlnTFDB | |
DATF | |
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TAIR short description |
AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) |
TAIR annotation |
AT-hook protein of GA feedback 2 (AGF2); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 20 (TAIR:AT4G14465.1); Has 804 Blast hits to 798 proteins in 45 species: Archae - 0; Bacteria - 14; Metazoa - 18; Fungi - 6; Plants - 758; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
IE_06C07_x |
External link |
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Gene Ontology (GO) |
(F) 3680: DNA or RNA binding |
->AT DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(P) 45087: response to stress |
->innate immune response |
(P) 45824: response to stress |
->negative regulation of innate immune response |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: transcription,DNA-dependent |
->regulation of transcription, DNA-templated |
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miRNA/tasiRNA |
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Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
1 |
|
|
1 |
2 |
soybean |
1 |
|
1 |
|
2 |
rice |
|
1 |
|
|
1 |
sorghum |
|
|
|
|
|
physcomitrella |
|
|
|
|
|
Total |
2 |
1 |
1 |
1 |
5 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> not_yet |
Plasmid construction | -> not_yet |
Transformed | -> not_yet |
T1 seed harvested | -> not_yet |
T2 seed harvested | -> not_yet |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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