Alias |
AtTCP11, CHE, TCP21 |
TF Classification |
FioreDB | TCP (Click to show phylogenetic tree) |
RARTF | TCP |
AtTFDB | TCP |
PlnTFDB | TCP (v3.0), TCP (v1.0) |
DATF | TCP |
|
TAIR short description |
TCP domain protein 11, TCP family transcription factor (.1) |
TAIR annotation |
TCP family transcription factor ; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT5G23280.1); Has 954 Blast hits to 946 proteins in 163 species: Archae - 0; Bacteria - 6; Metazoa - 29; Fungi - 0; Plants - 913; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
RE_02C05 |
External link |
|
Gene Ontology (GO) |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(P) 42752: other biological processes |
->regulation of circadian rhythm |
(P) 43433: other metabolic processes |
->negative regulation of sequence-specific DNA binding transcription factor activity |
(P) 48511: other biological processes |
->rhythmic process |
(F) 5515: protein binding |
->protein binding |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: other metabolic processes |
->regulation of transcription, DNA-templated |
|
miRNA/tasiRNA |
|
Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
|
|
1 |
3 |
4 |
soybean |
|
|
1 |
2 |
3 |
rice |
|
|
1 |
|
1 |
sorghum |
|
|
1 |
|
1 |
physcomitrella |
|
|
|
|
|
Total |
|
|
4 |
5 |
9 |
|
Repression motif |
|
Repression motif in putative orthologs |
EGREDRLRLALAVSCP at 552/659 in sorghum Sb028280 (Type II)
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
|
CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
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Comment |
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