fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G33310 (IAA13)

Alias IAA13
TF Classification
FioreDBAUX_IAA (Click to show phylogenetic tree)
RARTFAux/IAA
AtTFDB
PlnTFDBAUX/IAA (v3.0), AUX/IAA (v1.0)
DATFAUX-IAA
TAIR short description auxin-induced protein 13 (.1.2.3)
TAIR annotation Auxin induced gene, IAA13 (IAA13). (.1.2.3)
Gene model
Gene model cDNA support
AT2G33310.1 76
AT2G33310.2 64
AT2G33310.3 50
Entry clone (w/o stop) RE_01C11
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10583: other biological processes ->response to cyclopentenone
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9733: other biological processes ->response to auxin
(P) 9734: signal transduction ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 3 4
rice 1 2 3
sorghum 1 1
physcomitrella
Total 4 9 13
Repression motif 
GKGESELELGLGLSLG at 12/246 in AT2G33310.1
GKGESELELGLGLSLG at 12/247 in AT2G33310.2
GKGESELELGLGLSLG at 12/246 in AT2G33310.3
Repression motif
in putative orthologs		 
YPVEAELELGLGLSLG at 42/277 in poplar Pt034336 (Type III)
CPEESELELGLGLSLS at 24/291 in soybean Gm035802 (Type II)
SPDEGELELGLGLSLG at 39/289 in poplar Pt040422 (Type III)
AGDDEELELGLSLGSK at 33/280 in rice Os010501 (Type III)
HRSYKTLALALELMFT at 188/280 in rice Os010501 (Type III)
AGDDEELELGLSLGSK at 33/281 in rice Os010502 (Type III)
HRSYKTLALALELMFT at 189/281 in rice Os010502 (Type III)
YPVEAELELGLGLSLG at 42/303 in poplar Pt034335 (Type III)
AGDDEELELGLSLGSK at 33/280 in rice Os010503 (Type II)
HRSYKTLALALELMFT at 188/280 in rice Os010503 (Type II)
SPDEGELELGLGLSLG at 39/290 in poplar Pt040421 (Type III)
YPVEAELELGLSLGSG at 43/282 in poplar Pt041570 (Type II)
GQDDDDLELGLCLGSK at 46/395 in sorghum Sb028226 (Type II)
CPEESELELGLGLSLS at 24/287 in soybean Gm026737 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment