fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G27010 (ATTCP20, PCF1, AT-TCP20)

Alias ATTCP20, PCF1, AT-TCP20
TF Classification
FioreDBTCP (Click to show phylogenetic tree)
RARTFTCP
AtTFDBTCP
PlnTFDBTCP (v3.0), TCP (v1.0)
DATFTCP
TAIR short description ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1)
TAIR annotation Belongs to a TCP protein transcription factor family. Members of this family contain a predicted basic-helix-loop-helix domain involved in DNA binding. Related to rice PCF1 and PCF2 genes. Binds to the GCCCR element of CYCB1;1. Involved in regulation of expression of cell cycle control and ribosomal protein genes. (.1)
Gene model
Gene model cDNA support
AT3G27010.1 19
Entry clone (w/o stop) RE_02C04
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 1900056: developmental processes ->negative regulation of leaf senescence
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 8361: cell organization and biogenesis ->regulation of cell size
(P) 9653: other biological processes ->anatomical structure morphogenesis
(F) 987: nucleic acid binding ->core promoter proximal region sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 1 2
rice 1 1
sorghum 1 1
physcomitrella
Total 2 2 3 7
Repression motif 
HNQMPGLELGLSQEGN at 250/314 in AT3G27010.1
Repression motif
in putative orthologs		 
TQQLPGLELGLSQDGH at 269/320 in poplar Pt031931 (Type Ia)
AQHMPGLELGLSQDGH at 280/345 in soybean Gm043967 (Type II)
NQQLPGLELGLSQDGH at 246/302 in poplar Pt010021 (Type II)
AAAMPGLELGLSQDGH at 258/464 in sorghum Sb026383 (Type Ib)
SQQMPGLELGLSQDGH at 269/330 in soybean Gm051626 (Type Ia)
AAAMPGLELGLSQDGH at 253/317 in rice Os005399 (Type Ib)
SQQLPGLELGLSQDGH at 272/321 in poplar Pt003590 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project root, callus, shoot, phyllotaxis?
slow growth (direct input), abnormal root (direct input), abnormal shaped leaf (direct input), abnormal phyllotaxis (direct input)
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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