fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G38960

Alias
TF Classification
FioreDBCO (Click to show phylogenetic tree)
RARTFC2C2(Zn) / CO-like
AtTFDBC2C2-CO-like
PlnTFDBOrphans (v3.0), Orphans (v1.0)
DATF
TAIR short description B-box type zinc finger family protein (.1.2.3)
TAIR annotation B-box type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT2G21320.1); Has 1845 Blast hits to 1358 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 1736; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT4G38960.1 18
AT4G38960.2 9
AT4G38960.3 8
Entry clone (w/o stop) RE_03C06
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10100: developmental processes ->negative regulation of photomorphogenesis
(P) 10228: developmental processes ->vegetative to reproductive phase transition of meristem
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5622: other intracellular components ->intracellular
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 7623: other biological processes ->circadian rhythm
(F) 8270: other binding ->zinc ion binding
(P) 9640: response to abiotic or biotic stimulus ->photomorphogenesis
(F) 989: other molecular functions ->transcription factor activity, transcription factor binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 1 4
soybean 1 6 7
rice 1 1
sorghum 1 1
physcomitrella 1 1 2
Total 5 9 1 15
Repression motif 
IDDEMIDLNANPQRVHE at 138/183 in AT4G38960.1
IDDEMIDLNANPQRVHE at 105/150 in AT4G38960.2
IDDEMIDLNANPQRVHE at 181/226 in AT4G38960.3
Repression motif
in putative orthologs		 
METKMIDLNMKPNRIHE at 166/184 in soybean Gm030138 (Type II)
NQSRMIDLNSRPKRLQN at 202/221 in physcomitrella Pp035016 (Type II)
IDSKMIDLNMRPVRTHG at 166/211 in rice Os034540 (Type Ia)
METKMIDLNMKPNRIHE at 166/189 in soybean Gm030140 (Type II)
MESKMIDLNMKPNRIHE at 166/184 in soybean Gm001706 (Type II)
VDKNMIDLNMKPHRIHE at 165/184 in poplar Pt000227 (Type III)
NQPRMIDLNSRPKRLQS at 201/220 in physcomitrella Pp004666 (Type Ia)
MDNNLIDLNARPQRIHG at 166/203 in poplar Pt022229 (Type Ia)
MDKKLIDLNTRPLRLNG at 166/212 in soybean Gm030569 (Type Ia)
MDNKLIDLNARPQRVHG at 166/203 in poplar Pt018983 (Type II)
METKMIDLNMKPNRIHE at 166/184 in soybean Gm030139 (Type II)
VDKKMIDLNMKPQRTDH at 165/185 in poplar Pt037453 (Type II)
IDSKMIDLNMRPVRTHG at 166/211 in sorghum Sb006271 (Type Ia)
MDKKLIDLNTRPLRLNG at 133/179 in soybean Gm032644 (Type II)
METKMIDLNMKPNRIHE at 166/193 in soybean Gm030137 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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