fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G06250

Alias
TF Classification
FioreDBB3 (Click to show phylogenetic tree)
RARTFARF / ETTIN/ARF3
AtTFDBRAV
PlnTFDBABI3VP1 (v3.0), ABI3VP1 (v1.0)
DATFABI3-VP1
TAIR short description AP2/B3-like transcriptional factor family protein (.1.2)
TAIR annotation AP2/B3-like transcriptional factor family protein; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G11580.1); Has 1353 Blast hits to 1351 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1353; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G06250.1 7
AT5G06250.2 6
Entry clone (w/o stop) IE_0103
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10073: other biological processes ->meristem maintenance
(P) 10358: developmental processes ->leaf shaping
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45892: other cellular processes ->negative regulation of transcription, DNA-templated
(P) 48366: developmental processes ->leaf development
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 11 12
soybean 2 10 12
rice 1 7 8
sorghum 1 8 9
physcomitrella 1 1 2
Total 6 37 43
Repression motif
SSRTVRLFGVNLECQ at 214/267 in AT5G06250.1
SSRTVRLFGVNLECQ at 229/282 in AT5G06250.2
Repression motif
in putative orthologs
NSKRLRLFGVNLECQ at 298/363 in poplar Pt007926 (Type III)
SMAGSCLNLDLQHSPL at 625/951 in physcomitrella Pp021776 (Type II)
TSSGTRLFGVDLERA at 691/951 in physcomitrella Pp021776 (Type II)
SSRVLRLFGVNMECQ at 275/344 in soybean Gm004534 (Type II)
AAKRVRLFGVNLDNP at 346/420 in sorghum Sb014492 (Type III)
REAHSSLDLDL at 415/420 in sorghum Sb014492 (Type III)
PVKAVRLFGVDLLTA at 347/393 in rice Os003376 (Type III)
PSKRVRLFGVNLDCA at 262/311 in rice Os010946 (Type II)
GKARCSLNLDL at 306/311 in rice Os010946 (Type II)
PVQMVRLFGVNIFNV at 357/401 in poplar Pt035978 (Type III)
VGKRLRLFGVNMECP at 258/328 in poplar Pt016366 (Type III)
SGKMVRLFGVDLLKL at 297/342 in soybean Gm055124 (Type III)
PIQMVRLFGVNIFNV at 325/369 in poplar Pt042964 (Type III)
RPKRVRLFGVNLDCP at 256/312 in rice Os036826 (Type III)
GKKMCSLDLGL at 307/312 in rice Os036826 (Type III)
SGKRLRLFGVNMECA at 283/406 in soybean Gm008337 (Type III)
SSRQLRLFGVNLDCG at 273/322 in sorghum Sb028463 (Type II)
AGKRLRLFGVNMDCP at 343/413 in poplar Pt038767 (Type III)
AGKRLRLFGVNMECA at 303/377 in soybean Gm017484 (Type III)
PSRKLRLFGVNLDCG at 226/270 in sorghum Sb016626 (Type III)
PIQMVRLFGVNILKL at 335/384 in soybean Gm001006 (Type III)
AAKRLRLFGVNMDCP at 350/445 in poplar Pt032938 (Type III)
TSSGTRLFGVDLELA at 738/1017 in physcomitrella Pp024957 (Type III)
SGKRLRLFGVNMECA at 333/413 in soybean Gm053391 (Type III)
RSKRVRLFGVNLDCP at 221/274 in sorghum Sb001747 (Type III)
GKDACSLDLGL at 269/274 in sorghum Sb001747 (Type III)
SGRVLRLFGVNMECQ at 137/188 in soybean Gm007617 (Type III)
ASKRVRLFGVNLDCA at 432/486 in sorghum Sb022430 (Type III)
GKARCSLNLDL at 481/486 in sorghum Sb022430 (Type III)
AAKRVRLFGVNLDNP at 330/412 in rice Os009289 (Type III)
RDAHSALDLDL at 407/412 in rice Os009289 (Type III)
PSRRLRLFGVNLDCG at 213/258 in rice Os037664 (Type III)
SGRVLRLFGVNMECQ at 174/224 in soybean Gm052668 (Type III)
EPRVVRLFGVDIAGG at 320/365 in rice Os000364 (Type III)
PVKAVRLFGVDLLTT at 374/428 in sorghum Sb032995 (Type III)
PIQMVRLFGVNILKL at 351/401 in soybean Gm003570 (Type III)
NSKRLRLFGVNLECQ at 298/353 in poplar Pt007927 (Type II)
EARVVRLFGVDIAGD at 418/557 in sorghum Sb024795 (Type III)
NSRRLRLFGVNLECQ at 176/241 in poplar Pt044322 (Type III)
VGKRLRLFGVNMECP at 335/405 in poplar Pt016365 (Type III)
VGKRLRLFGVNMECP at 258/328 in poplar Pt016367 (Type III)
PVQMVRLFGVNLLKL at 311/351 in soybean Gm028283 (Type III)
PSRRLRLFGVNLDCG at 234/279 in rice Os037663 (Type III)
AVKAIRLFGVDLLTA at 194/245 in rice Os022683 (Type III)

        
Status
Plasmid construction -> not_yet
Plasmid construction -> not_yet
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants

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