fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G28360 (AtERF12)

Alias AtERF12
TF Classification
FioreDBAP2_ERF (Click to show phylogenetic tree)
RARTFERF
AtTFDBAP2-EREBP
PlnTFDBAP2-EREBP (v3.0), AP2-EREBP (v1.0)
DATFAP2-EREBP
TAIR short description ERF domain protein 12 (.1)
TAIR annotation encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. (.1)
Gene model
Gene model cDNA support
AT1G28360.1 9
Entry clone (w/o stop) RE_01A06
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5622: other intracellular components ->intracellular
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 6952: response to stress ->defense response
(P) 9873: signal transduction ->ethylene-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 2
rice 1 1
sorghum 1 1
physcomitrella 1 1
Total 2 3 2 7
Repression motif 
PSPLSLDLNHLPSAPSA at 72/189 in AT1G28360.1
RRGLAIDLNEPPPLWL at 178/189 in AT1G28360.1
Repression motif
in putative orthologs		 
DSWRTSLDLNLSAMVP at 143/323 in physcomitrella Pp028444 (Type Ib)
NFPFLLDLNSPPCLDEE at 304/323 in physcomitrella Pp028444 (Type Ib)
PPSTSGLSLDLNLPSD at 72/176 in poplar Pt018447 (Type Ia)
RRGLPIDLNEPPPLWL at 166/176 in poplar Pt018447 (Type Ia)
AGELPFDLNEPPPALLFG at 176/189 in rice Os022249 (Type Ib)
RRGLPIDLNEPPPLWL at 164/174 in poplar Pt024746 (Type II)
RRGIPIDLNEPPPMWL at 162/172 in soybean Gm041516 (Type II)
RRGIPIDLNEPPPLWL at 153/163 in soybean Gm036997 (Type Ia)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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