fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G50640 ( ATERF3)

Alias ATERF3
TF Classification
FioreDBAP2_ERF (Click to show phylogenetic tree)
RARTFPti6
AtTFDBAP2-EREBP
PlnTFDBAP2-EREBP (v3.0), AP2-EREBP (v1.0)
DATFAP2-EREBP
TAIR short description ethylene responsive element binding factor 3 (.1)
TAIR annotation encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-3). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. (.1)
Gene model
Gene model cDNA support
AT1G50640.1 104
Entry clone (w/o stop) IE_02F09
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10105: other cellular processes ->negative regulation of ethylene-activated signaling pathway
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45892: transcription,DNA-dependent ->negative regulation of transcription, DNA-templated
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 6952: response to stress ->defense response
(P) 9873: other cellular processes ->ethylene-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1 1 3
rice
sorghum 1 1
physcomitrella
Total 2 1 1 1 5
Repression motif 
NPPFQFDLNFPPLDCVD at 198/225 in AT1G50640.1
Repression motif
in putative orthologs		 
RPPLPFDLNALPFDDDA at 197/222 in soybean Gm038668 (Type II)
REPLPFDLNVLPLDDAD at 188/212 in soybean Gm049039 (Type III)
REPLPFDLNALPLDDAD at 186/210 in soybean Gm023109 (Type Ia)
RKPLPFDLNFPPLDQVD at 194/219 in poplar Pt030795 (Type Ia)
PVPLPFDLNLPPGGGGC at 217/356 in sorghum Sb026911 (Type Ib)
TMITICLNLGLICMLA at 300/356 in sorghum Sb026911 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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