fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G16350

Alias
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / ATR1
AtTFDB
PlnTFDBMYB-related (v3.0), MYB-related (v1.0)
DATFMYB-related
TAIR short description Homeodomain-like superfamily protein (.1)
TAIR annotation Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT5G47390.1); Has 2847 Blast hits to 2586 proteins in 268 species: Archae - 0; Bacteria - 117; Metazoa - 791; Fungi - 88; Plants - 1494; Viruses - 13; Other Eukaryotes - 344 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G16350.1 19
Entry clone (w/o stop) IE_0081
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 46686: other biological processes ->response to cadmium ion
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9651: response to abiotic or biotic stimulus ->response to salt stress
(P) 9723: other biological processes ->response to ethylene
(P) 9733: other biological processes ->response to auxin
(P) 9739: other biological processes ->response to gibberellin
(P) 9753: other biological processes ->response to jasmonic acid
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 2
rice 1 1
sorghum 1 1
physcomitrella
Total 2 2 2 6
Repression motif 
SSSAVKLFGVRLTDG at 47/387 in AT3G16350.1
KSYLPSLELSLNNTTE at 235/387 in AT3G16350.1
Repression motif
in putative orthologs		 
GGGGVKLFGVRLTDG at 27/356 in soybean Gm038242 (Type II)
GKSQPSLNLSLKSEFE at 208/356 in soybean Gm038242 (Type II)
GGGGVRLFGVRLTSP at 31/366 in rice Os000774 (Type Ib)
SIEPSALSLQLTGPTN at 328/366 in rice Os000774 (Type Ib)
PLSGVKLFGVRLTDG at 36/367 in poplar Pt028574 (Type II)
VDALPSLNLSLKPEFE at 205/367 in poplar Pt028574 (Type II)
SGGGVRLFGVRLTTA at 73/407 in sorghum Sb024608 (Type Ib)
SMEPTALSLQLIGSTD at 369/407 in sorghum Sb024608 (Type Ib)
GGGGVKLFGVRLTDG at 27/360 in soybean Gm040883 (Type Ia)
GKSQPSLNLSLKSEFE at 212/360 in soybean Gm040883 (Type Ia)
PLSGVKLFGVRLTDG at 36/369 in poplar Pt028573 (Type Ia)
VDALPSLNLSLKPEFE at 205/369 in poplar Pt028573 (Type Ia)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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