fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G62100 (IAA30)

Alias IAA30
TF Classification
FioreDBAUX_IAA (Click to show phylogenetic tree)
RARTFAux/IAA
AtTFDB
PlnTFDBAUX/IAA (v3.0), AUX/IAA (v1.0)
DATFAUX-IAA
TAIR short description indole-3-acetic acid inducible 30 (.1)
TAIR annotation Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA30 lacks the conserved degron (domain II) found in many family members. IAA30 transcripts are induced by auxin treatment and accumulate preferentially in the quiescent center cells of the root meristem. Overexpression of IAA30 leads to defects in gravitropism, root development, root meristem maintenance, and cotyledon vascular development. Target of LEC2 and AGL15. Promotes somatyic embryogenesis. (.1)
Gene model
Gene model cDNA support
AT3G62100.1 7
Entry clone (w/o stop) IE_01F02
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10262: developmental processes ->somatic embryogenesis
(P) 10583: other biological processes ->response to cyclopentenone
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48364: developmental processes ->root development
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9630: response to abiotic or biotic stimulus ->gravitropism
(P) 9733: other biological processes ->response to auxin
(P) 9734: other cellular processes ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 4 6
rice
sorghum
physcomitrella
Total 2 2 4 8
Repression motif 
RNLSTDLRLGLSFGSS at 33/172 in AT3G62100.1
Repression motif
in putative orthologs		 
QQLPTDLRLGLGISAT at 35/180 in soybean Gm007900 (Type III)
KDLSTDLRLGLSISTS at 37/175 in poplar Pt016750 (Type Ia)
TDLSTDLRLGLSISPS at 103/244 in soybean Gm035692 (Type III)
TDLSTDLRLGLSISPS at 119/260 in soybean Gm045965 (Type III)
RDLSTDLRLGLGISTS at 37/174 in poplar Pt039254 (Type II)
QELPTDLRLGLGISAT at 35/177 in soybean Gm052949 (Type III)
DHLRTDLRLGLSISTT at 40/180 in soybean Gm002637 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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