fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G04340 (ZAT6, CZF2, C2H2)

Alias ZAT6, CZF2, C2H2
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1)
TAIR annotation putative c2h2 zinc finger transcription factor mRNA, (.1)
Gene model
Gene model cDNA support
AT5G04340.1 33
Entry clone (w/o stop) IE_02A06
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10200: other biological processes ->response to chitin
(F) 1047: nucleic acid binding ->core promoter binding
(P) 2000280: developmental processes ->regulation of root development
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(F) 46872: other binding ->metal ion binding
(P) 55062: other biological processes ->phosphate ion homeostasis
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 3 4
rice
sorghum 1 1
physcomitrella
Total 1 2 5 8
Repression motif 
EDEYIALCLMLLARDG at 52/238 in AT5G04340.1
SGHRGFDLNIPPIPEFS at 201/238 in AT5G04340.1
Repression motif
in putative orthologs
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo
hyponastic leaf (A20792, direct input), rough surface leaf (A20792)
and more...
CRES-T phenotype from publication
CRES-T phenotype from bulk project hyponastic leaf (A20298-134)

early flowering, dwarf, variegated leaf, rough surface leaf (A20684-43)
hyponastic leaf (A20296-18)

abnormal shaped leaf (A20684-13)
hyponastic leaf, rough surface leaf (A20298-130)

dwarf (A20509-79)
Phenotype in ornamental plants
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