fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G28370 (AtERF11)

Alias AtERF11
TF Classification
FioreDBAP2_ERF (Click to show phylogenetic tree)
RARTFERF
AtTFDBAP2-EREBP
PlnTFDBAP2-EREBP (v3.0), AP2-EREBP (v1.0)
DATFAP2-EREBP
TAIR short description ERF domain protein 11 (.1)
TAIR annotation encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. (.1)
Gene model
Gene model cDNA support
AT1G28370.1 33
Entry clone (w/o stop) RE_04A06_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 1944: developmental processes ->vasculature development
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 51301: other cellular processes ->cell division
(C) 5622: other intracellular components ->intracellular
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9873: other cellular processes ->ethylene-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 5 6
soybean 1 5 6
rice 1 2 3
sorghum 1 1
physcomitrella 1 1
Total 1 4 12 17
Repression motif 
GRRVVLDLDLNFPPPPEN at 153/166 in AT1G28370.1
Repression motif
in putative orthologs		 
RSSILHLDLNLPPPAD at 199/210 in poplar Pt036816 (Type III)
NRRVLLDLDLNVPPLPEV at 180/193 in soybean Gm034499 (Type III)
NRRILLDLDLNVPPLPEV at 180/193 in soybean Gm037405 (Type III)
SSDTPLDLNLGPAVSTV at 141/243 in poplar Pt025171 (Type III)
PRSSVDLDLNLNLPPP at 229/243 in poplar Pt025171 (Type III)
DSWRTSLDLNLSAMVP at 143/323 in physcomitrella Pp028444 (Type II)
NFPFLLDLNSPPCLDEE at 304/323 in physcomitrella Pp028444 (Type II)
ADSSPLDLNLAPAAVAS at 115/222 in soybean Gm036996 (Type III)
NGSRIFDLDLNHPPPHEI at 209/222 in soybean Gm036996 (Type III)
ADSSPLDLNLAPVAVSS at 112/219 in soybean Gm041517 (Type III)
NGSRMFDLDLNHPPPHEI at 206/219 in soybean Gm041517 (Type III)
VPASPSLDLSLGMSAM at 139/222 in rice Os018844 (Type III)
PAVGVGLDLNLPPPIE at 210/222 in rice Os018844 (Type III)
RRGIPIDLNEPPPMWL at 162/172 in soybean Gm041516 (Type III)
SSDAPLDLNLGPAVSTV at 136/233 in poplar Pt019626 (Type Ia)
PRRSVDLDLNLPPPPE at 221/233 in poplar Pt019626 (Type Ia)
MPLPPTLDLDLFHRAA at 128/235 in rice Os004257 (Type III)
NKAAAFDLDLNRPPPVEN at 223/235 in rice Os004257 (Type III)
PRRSVLDLDLNLPPPLDA at 201/213 in poplar Pt004210 (Type III)
PHRKVLDLDLNVPPPPEV at 170/183 in soybean Gm016091 (Type II)
HHDNKGLSLDLDLNLP at 208/224 in poplar Pt032466 (Type III)
RRDSKGLSLDLDLNLA at 210/226 in poplar Pt024322 (Type III)
MPIPPSLELDLFHRAA at 133/236 in rice Os022250 (Type II)
KKAIAFDLDLNCPPPMEV at 224/236 in rice Os022250 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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