fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G59780 (ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2)

Alias ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / ATR1
AtTFDBMYB / R2R3-MYBs
PlnTFDBMYB-related(.1, .2), MYB(.3) (v3.0), MYB-related (v1.0)
DATFMYB
TAIR short description myb domain protein 59 (.1.2.3)
TAIR annotation Encodes a putative transcription factor (MYB59). (.1.2.3)
Gene model
Gene model cDNA support
AT5G59780.2 18
AT5G59780.1 16
AT5G59780.3 15
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10200: other biological processes ->response to chitin
(F) 1135: other molecular functions ->transcription factor activity, RNA polymerase II transcription factor recruiting
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(P) 46686: other biological processes ->response to cadmium ion
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 6357: transcription,DNA-dependent ->regulation of transcription from RNA polymerase II promoter
(P) 9723: other biological processes ->response to ethylene
(P) 9739: other biological processes ->response to gibberellin
(P) 9751: other biological processes ->response to salicylic acid
(P) 9753: other biological processes ->response to jasmonic acid
(F) 981: transcription factor activity ->RNA polymerase II transcription factor activity, sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 2
rice 1 1 2
sorghum 1 1 2
physcomitrella
Total 4 4 8
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
QVGVGKLQLRLFCYSR at 101/407 in sorghum Sb028959 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment