fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G47390

Alias
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / CIRCADIAN CLOCK ASSOCIATED 1
AtTFDB
PlnTFDBMYB-related (v3.0), MYB-related (v1.0)
DATFMYB-related
TAIR short description myb-like transcription factor family protein (.1)
TAIR annotation myb-like transcription factor family protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G16350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G47390.1 85
Entry clone (w/o stop) RE_1457_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10150: developmental processes ->leaf senescence
(P) 10252: other biological processes ->auxin homeostasis
(P) 122: other cellular processes ->negative regulation of transcription from RNA polymerase II promoter
(P) 2000469: other metabolic processes ->negative regulation of peroxidase activity
(P) 30307: cell organization and biogenesis ->positive regulation of cell growth
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45892: other cellular processes ->negative regulation of transcription, DNA-templated
(P) 46686: other biological processes ->response to cadmium ion
(P) 48366: developmental processes ->leaf development
(P) 48527: developmental processes ->lateral root development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
(P) 90697: developmental processes ->post-embryonic plant organ morphogenesis
(P) 9646: response to abiotic or biotic stimulus ->response to absence of light
(P) 9651: response to stress ->response to salt stress
(P) 9723: other biological processes ->response to ethylene
(P) 9733: other biological processes ->response to auxin
(P) 9737: other biological processes ->response to abscisic acid
(P) 9739: other biological processes ->response to gibberellin
(P) 9751: other biological processes ->response to salicylic acid
(P) 9753: other biological processes ->response to jasmonic acid
(F) 976: nucleic acid binding ->transcription regulatory region sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2 4
soybean 1 1 2 4
rice 1 1 2
sorghum 1 1 2
physcomitrella 1 1 2
Total 5 3 6 14
Repression motif 
PNRGVKLFGVRLTEG at 23/365 in AT5G47390.1
GESDQSLSLKLGGGSS at 330/365 in AT5G47390.1
Repression motif
in putative orthologs		 
PNRVVKLFGVRLTDG at 24/337 in poplar Pt030720 (Type II)
DDGSSSLSLKLLEGPS at 301/337 in poplar Pt030720 (Type II)
GGGGVKLFGVRLTDG at 27/356 in soybean Gm038242 (Type III)
GKSQPSLNLSLKSEFE at 208/356 in soybean Gm038242 (Type III)
GGGGVRLFGVRLTSP at 31/366 in rice Os000774 (Type III)
SIEPSALSLQLTGPTN at 328/366 in rice Os000774 (Type III)
PLSGVKLFGVRLTDG at 36/367 in poplar Pt028574 (Type III)
VDALPSLNLSLKPEFE at 205/367 in poplar Pt028574 (Type III)
ETVSTSLSLNLVGGQN at 293/318 in rice Os037028 (Type Ia)
SGGGVRLFGVRLTTA at 73/407 in sorghum Sb024608 (Type III)
SMEPTALSLQLIGSTD at 369/407 in sorghum Sb024608 (Type III)
PDRGVRLFGVRLTDG at 24/356 in physcomitrella Pp024115 (Type Ia)
TKDMSQLNLGLSTPEP at 311/356 in physcomitrella Pp024115 (Type Ia)
SQLTLKLLDQPS at 323/356 in physcomitrella Pp024115 (Type Ia)
PDRGVRLFGVRLTDG at 24/341 in physcomitrella Pp035789 (Type II)
TKEMSQLNLGLPTPEP at 296/341 in physcomitrella Pp035789 (Type II)
SQLTLKLLDQPS at 308/341 in physcomitrella Pp035789 (Type II)
PLSGVKLFGVRLTDG at 36/369 in poplar Pt028573 (Type III)
VDALPSLNLSLKPEFE at 205/369 in poplar Pt028573 (Type III)
ETVSTSLSLNLLGGQN at 339/460 in sorghum Sb021158 (Type Ia)
NPGQKKLCLSLSLSLS at 381/460 in sorghum Sb021158 (Type Ia)
PNRGVKLFGVRLTDG at 24/333 in soybean Gm047088 (Type II)
PNRGVKLFGVRLTDG at 24/336 in poplar Pt011546 (Type Ia)
GGGGVKLFGVRLTDG at 27/360 in soybean Gm040883 (Type III)
GKSQPSLNLSLKSEFE at 212/360 in soybean Gm040883 (Type III)
PNRGVKLFGVRLTDG at 24/333 in soybean Gm011445 (Type Ia)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment