fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G00180 (YAB3)

Alias YAB3
TF Classification
FioreDBYABBY (Click to show phylogenetic tree)
RARTFC2C2(Zn) / YABBY
AtTFDBC2C2-YABBY
PlnTFDBC2C2-YABBY (v3.0), C2C2-YABBY (v1.0)
DATFC2C2-YABBY
TAIR short description YABBY3, Plant-specific transcription factor YABBY family protein (.1.2)
TAIR annotation YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades. (.1.2)
Gene model
Gene model cDNA support
AT4G00180.1 18
AT4G00180.2 17
Entry clone (w/o stop) RE_1478_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10154: developmental processes ->fruit development
(P) 10158: other cellular processes ->abaxial cell fate specification
(P) 1902183: other biological processes ->regulation of shoot apical meristem development
(P) 2000024: developmental processes ->regulation of leaf development
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(P) 9944: developmental processes ->polarity specification of adaxial/abaxial axis
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 5 6
rice 1 1 2
sorghum 1 1 2
physcomitrella
Total 1 4 8 13
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
MSSSSTLSLDLLPSSE at 6/213 in poplar Pt010908 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        

         abnormal seedling (direct input), 
         meristem-less (direct input)


        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID33
           Chrysanthemum
           35S:AtCDS-SRDX
           2005-08-18
            
           incurving leaves 
           
          

         

         

          Comment